Basic Information
Locus ID:
Sp6g20700.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 3607271 | 3608542 | + | Sp6g20700.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.39 | 21,100.89 Da | 42.22 | 65.23 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 89 | 126 | 4.43257E-11 | - |
| Pfam | PF12906 | RING-variant domain | 83 | 125 | 2.6E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 91 | 128 | 1.04E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 58 | 137 | 3.6E-13 | IPR013083 |
| SMART | SM00744 | ringv_2 | 80 | 126 | 7.3E-11 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 68 | 132 | 16.08069 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 85 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59000.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_006401014.1 | uncharacterized protein LOC18017990 [Eutrema salsugineum] | 0 |
| TrEMBL | A0A8T1XVY6 | Zinc finger RING-CH-type OS=Arabidopsis suecica OX=45249 GN=ISN44_As13g021070 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology