Basic Information
Locus ID:
Sp6g19420.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 3182506 | 3184949 | - | Sp6g19420.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 54,523.50 Da | 48.77 | 86.39 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 220 | 267 | 8.9E-9 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 1.3E-7 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 206 | 1.6E-17 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 314 | 379 | 1.16E-6 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 273 | 7.67E-53 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 151 | 288 | 2.4E-27 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 314 | 393 | 1.6E-6 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 14 | 150 | 1.5E-32 | IPR036770 |
| SMART | SM00248 | ANK_2a | 177 | 206 | 8.2E-7 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 8.5E-5 | IPR002110 |
| SMART | SM00184 | ring_2 | 321 | 371 | 2.9E-6 | IPR001841 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.0021 | IPR002110 |
| SMART | SM00248 | ANK_2a | 220 | 249 | 0.0028 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 148 | 0.0053 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 372 | 10.527129 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 220 | 251 | 9.807884 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 10.68617 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 9.914011 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 11.956926 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 139 | 9.595634 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 139 | 9.61777 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 220 | 252 | 11.16695 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.06336 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 177 | 204 | 13.018181 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 177 | 209 | 13.67769 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 236 | 250 | 2.6E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 178 | 193 | 2.6E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_006401175.1 | E3 ubiquitin-protein ligase XBAT32 [Eutrema salsugineum] | 0 |
| Q6NLQ8 | E3 ubiquitin-protein ligase XBAT32 OS=Arabidopsis thaliana OX=3702 GN=XBAT32 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J3I3P0 | E3 ubiquitin-protein ligase XBAT32 OS=Noccaea caerulescens OX=107243 GN=LC_TR5184_c0_g1_i1_g.18158 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology