Basic Information
Locus ID:
Sp6g17640.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Fasciclin-like arabinogalactan protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 2356139 | 2358097 | - | Sp6g17640.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 44,992.82 Da | 34.71 | 88.94 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 39 | 106 | 1.6E-5 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 203 | 328 | 1.7E-10 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 34 | 173 | 4.32E-18 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 183 | 329 | 1.44E-15 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 174 | 329 | 2.3E-9 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 25 | 173 | 4.0E-9 | IPR036378 |
| SMART | SM00554 | fasc_3 | 63 | 176 | 3.3 | IPR000782 |
| SMART | SM00554 | fasc_3 | 225 | 329 | 2.1E-14 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 27 | 173 | 10.795441 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 187 | 326 | 10.497044 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 377 | 394 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55730.1 | FASCICLIN-like arabinogalactan 1. fasciclin-like arabinogalactan-protein 1 (Fla1) | 0 |
| RefSeq | XP_006401420.1 | fasciclin-like arabinogalactan protein 1 [Eutrema salsugineum] | 0 |
| Q9FM65 | Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J3DP15 | Fasciclin-like arabinogalactan protein 1 (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR18423_c0_g1_i1_g.59016 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology