Basic Information
Locus ID:
Sp6g17360.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
glycerophosphodiester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 2259616 | 2263525 | + | Sp6g17360.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 83,844.35 Da | 36.46 | 91.37 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 47 | 345 | 0.0 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 362 | 665 | 6.96048E-180 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 368 | 660 | 4.7E-28 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 362 | 665 | 1.12E-42 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 46 | 345 | 1.31E-38 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 45 | 346 | 1.7E-33 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 362 | 666 | 9.7E-44 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 362 | 666 | 46.127918 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 47 | 346 | 51.332901 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_009120058.1 | glycerophosphodiester phosphodiesterase GDPDL4 [Brassica rapa] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8D9I1Y4 | glycerophosphodiester phosphodiesterase OS=Brassica campestris OX=3711 GN=BRAPAZ1V2_A10P13270.2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology