Basic Information
Locus ID:
Sp6g16910.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Short Name:
PDC1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 2089375 | 2091131 | - | Sp6g16910.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 62,069.25 Da | 30.71 | 91.92 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 14 | 175 | 6.26977E-93 | - |
| CDD | cd02005 | TPP_PDC_IPDC | 373 | 555 | 2.2456E-89 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 208 | 325 | 7.9E-19 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 418 | 543 | 1.1E-14 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 11 | 177 | 9.9E-36 | IPR012001 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 203 | 351 | 1.0E-31 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 11 | 190 | 5.29E-45 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 373 | 567 | 1.77E-41 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 367 | 554 | 8.0E-56 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 8 | 184 | 3.3E-61 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 197 | 360 | 3.0E-40 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 7 | 567 | 4.2E-210 | IPR012110 |
| Coils | Coil | Coil | 516 | 536 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_002866069.1 | pyruvate decarboxylase 2 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q9FFT4 | Pyruvate decarboxylase 2 OS=Arabidopsis thaliana OX=3702 GN=PDC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8S2B4N9 | Genome assembly, chromosome: 8 OS=Arabidopsis arenosa OX=38785 GN=AARE701A_LOCUS21537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology