Basic Information
Locus ID:
Sp6g16100.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 1699372 | 1700085 | - | Sp6g16100.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 25,164.82 Da | 53.90 | 101.92 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 172 | 207 | 3.3E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 172 | 212 | 9.06E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 123 | 213 | 1.5E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 168 | 207 | 9.169853 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18760.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_018448710.1 | PREDICTED: RING-H2 finger protein ATL57 [Raphanus sativus] | 0 |
| TrEMBL | A0A6J0KLH1 | RING-H2 finger protein ATL57 OS=Raphanus sativus OX=3726 GN=LOC108820242 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G53910.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015768m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp6g15980.v2.2, Sp6g16100.v2.2, Sp6g27690.v2.2 |