Basic Information
Locus ID:
Sp6g15980.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 1655899 | 1656630 | + | Sp6g15980.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 27,951.65 Da | 49.47 | 93.87 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 183 | 225 | 4.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 177 | 231 | 5.3E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 231 | 2.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 184 | 224 | 1.9E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 184 | 225 | 13.271187 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53910.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018448710.1 | PREDICTED: RING-H2 finger protein ATL57 [Raphanus sativus] | 0 |
| Q8BGI1 | RING finger protein 24 OS=Mus musculus OX=10090 GN=Rnf24 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6D2KBE1 | RING-type domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS30658 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G53910.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015768m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp6g15980.v2.2, Sp6g16100.v2.2, Sp6g27690.v2.2 |