Basic Information
Locus ID:
Sp6g15280.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Wall-associated receptor kinase galacturonan-binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 1273561 | 1276101 | + | Sp6g15280.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 43,004.05 Da | 50.04 | 79.97 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 327 | 370 | 2.5153E-16 | - |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 163 | 231 | 4.1E-6 | IPR032872 |
| Pfam | PF13639 | Ring finger domain | 327 | 370 | 3.0E-13 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 28 | 98 | 5.2E-15 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 320 | 375 | 2.99E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 288 | 375 | 5.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 328 | 369 | 5.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 328 | 370 | 12.769585 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006401744.1 | putative RING-H2 finger protein ATL21B isoform X1 [Eutrema salsugineum] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A8X7VFL1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_022011 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology