Basic Information
Locus ID:
Sp6g14400.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 886399 | 887696 | - | Sp6g14400.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 16,802.95 Da | 42.56 | 54.16 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 94 | 137 | 3.3E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 85 | 141 | 1.21E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 141 | 4.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 95 | 136 | 1.9E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 95 | 137 | 10.999225 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52155.1 | - | 0 |
| RefSeq | XP_024011842.1 | E3 ubiquitin-protein ligase Os04g0590900 [Eutrema salsugineum] | 0 |
| Q9FIR0 | RING-H2 finger protein ATL30 OS=Arabidopsis thaliana OX=3702 GN=ATL30 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D3C455 | RING-type domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G52150.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015563m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g14390.v2.2, Sp6g14400.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g031950.2N |