Basic Information
Locus ID:
Sp6g14390.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 881581 | 883953 | - | Sp6g14390.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 25,706.44 Da | 63.04 | 67.60 | -0.87 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 178 | 217 | 3.83421E-17 | - |
| Pfam | PF17123 | RING-like zinc finger | 178 | 206 | 1.4E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 169 | 223 | 6.03E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 225 | 2.1E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 179 | 219 | 2.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 179 | 220 | 10.881201 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 137 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52150.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020871853.1 | E3 ubiquitin ligase BIG BROTHER-related isoform X1 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q9LT17 | E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana OX=3702 GN=BBR PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T1XI93 | Zinc finger RING-type OS=Arabidopsis thaliana x Arabidopsis arenosa OX=1240361 GN=ISN45_Aa08g014970 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G52150.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015563m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g14390.v2.2, Sp6g14400.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g031950.2N |