Basic Information
Locus ID:
Sp6g14380.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 877490 | 880028 | - | Sp6g14380.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 29,698.29 Da | 50.07 | 74.59 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 214 | 256 | 4.00123E-17 | - |
| Pfam | PF13639 | Ring finger domain | 214 | 256 | 1.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 201 | 259 | 1.75E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 166 | 259 | 3.4E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 215 | 255 | 1.2E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 215 | 256 | 11.102496 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 150 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024012588.1 | E3 ubiquitin ligase BIG BROTHER-related [Eutrema salsugineum] | 0 |
| Q9LT17 | E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana OX=3702 GN=BBR PE=2 SV=1 | 0 | |
| TrEMBL | V4LLG9 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015344mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology