Basic Information
Locus ID:
Sp6g14370.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 872609 | 874046 | - | Sp6g14370.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 17,497.17 Da | 53.31 | 63.71 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17123 | RING-like zinc finger | 112 | 140 | 1.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 112 | 157 | 7.57E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 158 | 1.8E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 113 | 153 | 1.0E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 113 | 154 | 10.77793 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 51 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018511927.2 | E3 ubiquitin-protein ligase BIG BROTHER [Brassica rapa] | 0 |
| Q8L649 | E3 ubiquitin-protein ligase BIG BROTHER OS=Arabidopsis thaliana OX=3702 GN=BB PE=1 SV=1 | 0 | |
| TrEMBL | A0A3P6A4J4 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA02T06260Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology