Basic Information
Locus ID:
Sp6g14230.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 796707 | 799398 | - | Sp6g14230.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.50 | 47,359.01 Da | 33.63 | 76.64 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 303 | 337 | 0.0052 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 265 | 298 | 0.07 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 111 | 131 | 3.1E-7 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 141 | 177 | 5.7E-5 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 107 | 131 | 3.66E-6 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 138 | 428 | 4.33E-46 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 137 | 259 | 4.3E-14 | IPR015943 |
| Gene3D | G3DSA:2.30.30.1190 | - | 99 | 136 | 5.8E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 260 | 433 | 2.4E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 217 | 254 | 5.9 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 109 | 133 | 2.8E-4 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 28 | 53 | 8.5E-4 | IPR000571 |
| SMART | SM00320 | WD40_4 | 388 | 425 | 4.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 298 | 0.025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 301 | 338 | 1.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 342 | 385 | 6.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 138 | 177 | 1.7E-6 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 28 | 54 | 10.849669 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 145 | 177 | 11.629227 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 268 | 301 | 8.781968 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 107 | 134 | 14.201578 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 307 | 11.510997 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 145 | 186 | 14.719144 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 164 | 178 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 285 | 299 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 325 | 339 | 1.3E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_006401881.1 | zinc finger CCCH domain-containing protein 63 [Eutrema salsugineum] | 0 |
| Q9FNZ1 | Zinc finger CCCH domain-containing protein 63 OS=Arabidopsis thaliana OX=3702 GN=ZFWD2 PE=2 SV=1 | 0 | |
| TrEMBL | V4LHV7 | Zinc finger CCCH domain-containing protein 48-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013582mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology