Basic Information
Locus ID:
Sp6g14120.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 749329 | 751697 | - | Sp6g14120.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 22,065.23 Da | 66.14 | 97.37 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 75 | 3.77421E-41 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 3.5E-25 | IPR002100 |
| Pfam | PF01486 | K-box region | 89 | 169 | 5.2E-11 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 75 | 7.06E-31 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 76 | 1.3E-26 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 4.2E-39 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 81 | 181 | 9.199741 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.174253 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 2.2E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 2.2E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 2.2E-28 | IPR002100 |
| Coils | Coil | Coil | 88 | 108 | - | - |
| Coils | Coil | Coil | 145 | 172 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51870.4 | - | 0 |
| RefSeq | XP_009132581.1 | MADS-box protein AGL71-like [Brassica rapa] | 0 |
| Q9LT93 | MADS-box protein AGL71 OS=Arabidopsis thaliana OX=3702 GN=AGL71 PE=2 SV=1 | 0 | |
| TrEMBL | A0A397ZUY7 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA03T10890Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology