Basic Information
Locus ID:
Sp6g14110.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 744263 | 746263 | - | Sp6g14110.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 25,071.76 Da | 41.66 | 84.89 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 76 | 4.31233E-41 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 4.7E-25 | IPR002100 |
| Pfam | PF01486 | K-box region | 102 | 173 | 4.0E-18 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 87 | 4.71E-31 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 90 | 1.6E-27 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 6.4E-40 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.370502 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 92 | 193 | 10.440674 | IPR002487 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 8.3E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 8.3E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 8.3E-29 | IPR002100 |
| Coils | Coil | Coil | 148 | 171 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51860.1 | K-box region and MADS-box transcription factor family protein . | 0 |
| RefSeq | XP_019087581.1 | PREDICTED: MADS-box protein AGL72 [Camelina sativa] | 0 |
| Q9FLH5 | MADS-box protein AGL72 OS=Arabidopsis thaliana OX=3702 GN=AGL72 PE=2 SV=1 | 0 | |
| TrEMBL | M4EHL7 | MADS-box protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology