Basic Information
Locus ID:
Sp6g12630.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 5841 | 7010 | - | Sp6g12630.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 36,281.03 Da | 46.91 | 87.96 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 264 | 303 | 7.6E-8 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 78 | 197 | 8.24E-12 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 258 | 306 | 4.71E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 55 | 218 | 1.5E-17 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 250 | 306 | 1.0E-10 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 261 | 303 | 11.032289 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50450.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_024011553.1 | F-box protein At5g50450 isoform X3 [Eutrema salsugineum] | 0 |
| Q9FK27 | F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6D2JF85 | MYND-type domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS25695 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology