halophFGD

Basic Information

Locus ID: Sp6g11610.v2.2

Species & Taxonomic ID: Schrenkiella parvula & 98039

Genome Assembly: v2.2

Description: U4 U6 small nuclear ribonucleoprotein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ch6-4	625306	626664	-	Sp6g11610.v2.2

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.42	20,624.27 Da	29.83	98.86	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08268	F-box associated domain	5	127	1.1E-19	IPR013187
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	4	137	1.6E-13	IPR017451

KEGG Pathway

KO Term:

K12844 (U4/U6 small nuclear ribonucleoprotein PRP31)

Pathway:

ko03040 (Spliceosome) map03040 (Spliceosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G71290.1	F-box associated ubiquitination effector family protein.
RefSeq	NP_177285.1	F-box associated ubiquitination effector family protein [Arabidopsis thaliana]
Swiss-Prot	Q9SSK2	Putative F-box protein At1g70970 OS=Arabidopsis thaliana OX=3702 GN=At1g70970 PE=4 SV=1
TrEMBL	A0A8T2GVT1	F-box associated interaction domain OS=Arabidopsis thaliana x Arabidopsis arenosa OX=1240361 GN=ISN45_At01g062110 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	6	AT1G70380.1, AT1G70390.1, AT1G70960.1, AT1G70970.1 ... AT1G71290.1, AT1G76830.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10019476m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g03160.v2.2, Sp6g11610.v2.2
Brassicaceae	Brassica nigra	1	BniB01g059530.2N