Basic Information
Locus ID:
Sp6g10250.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
3-hydroxyisobutyryl-CoA hydrolase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-3 | 1294486 | 1299290 | - | Sp6g10250.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 73,507.37 Da | 51.41 | 82.97 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 110 | 200 | 5.12881E-19 | - |
| Pfam | PF08284 | Retroviral aspartyl protease | 114 | 212 | 2.0E-14 | - |
| SUPERFAMILY | SSF50630 | Acid proteases | 110 | 205 | 2.19E-6 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 101 | 226 | 4.0E-20 | IPR021109 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| Coils | Coil | Coil | 238 | 258 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G06310.1 | acyl-CoA oxidase 6. Encodes a putative acyl-CoA oxidase. However, no transcripts have been detected for this gene and no altered phenotypes have been detected in plants mutant for this gene. This suggests that ACX6 does not significantly contribute to seedling beta-oxidation of fatty acids or indole-3-butyric acid in vivo. | 0 |
| RefSeq | XP_048621188.1 | uncharacterized protein BNAC08G38930D isoform X1 [Brassica napus] | 0 |
| Q9LMI7 | Putative acyl-coenzyme A oxidase 3.2, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=ACX3.2 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6D2HWZ1 | Retrotrans_gag domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS8791 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Schrenkiella parvula | 123 | Sp1g29790.v2.2, Sp1g29840.v2.2, Sp1g29850.v2.2 ... |