Basic Information
Locus ID:
Sp6g10190.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-3 | 1251587 | 1254354 | + | Sp6g10190.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.22 | 39,210.85 Da | 71.94 | 72.74 | -0.93 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 50 | 89 | 1.1E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 44 | 96 | 4.37E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 119 | 2.5E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 51 | 89 | 1.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 51 | 90 | 13.035139 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 66 | 75 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 165 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G44280.1 | RING 1A. Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1b, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression. | 0 |
| RefSeq | XP_021911131.1 | putative E3 ubiquitin-protein ligase RING1a isoform X2 [Carica papaya] | 0 |
| Q9FKW0 | Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana OX=3702 GN=RING1A PE=1 SV=2 | 0 | |
| TrEMBL | A0A6D2HRM5 | RING-type domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS2978 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g24550.v2.2, Sp1g24560.v2.2, Sp6g10190.v2.2 |