Basic Information
Locus ID:
Sp6g08070.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-2 | 674053 | 675868 | + | Sp6g08070.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.37 | 48,607.22 Da | 57.99 | 85.05 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 18 | 162 | 1.88831E-50 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 231 | 274 | 1.8197E-21 | - |
| Pfam | PF02225 | PA domain | 75 | 141 | 7.9E-9 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 231 | 274 | 1.9E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 225 | 280 | 3.53E-18 | - |
| SUPERFAMILY | SSF52025 | PA domain | 76 | 159 | 5.75E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 198 | 279 | 2.9E-18 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 22 | 154 | 3.8E-23 | - |
| SMART | SM00184 | ring_2 | 232 | 273 | 8.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 232 | 274 | 12.076194 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09560.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_006397186.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 4 [Eutrema salsugineum] | 0 |
| Q0WPW5 | Receptor homology region, transmembrane domain- and RING domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=RMR4 PE=2 SV=1 | 0 | |
| TrEMBL | V4L4S1 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028665mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology