Basic Information
Locus ID:
Sp6g06860.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-1 | 2992100 | 2996602 | + | Sp6g06860.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 102,580.97 Da | 49.30 | 79.25 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 740 | 894 | 8.52647E-58 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 305 | 893 | 4.8E-85 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 44 | 136 | 2.4E-24 | IPR006615 |
| SUPERFAMILY | SSF143791 | DUSP-like | 16 | 136 | 2.88E-29 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 302 | 896 | 6.7E-111 | IPR038765 |
| Gene3D | G3DSA:3.30.2230.10 | - | 8 | 148 | 4.6E-37 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 697 | 904 | 1.3E-59 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 149 | 235 | 1.9E-6 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 296 | 503 | 2.6E-67 | - |
| SMART | SM00695 | dusp | 39 | 138 | 1.8E-41 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 20 | 135 | 19.478638 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 304 | 896 | 58.256821 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 837 | 854 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 305 | 320 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 674 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10570.1 | ubiquitin-specific protease 9. encodes a ubiquitin-specific protease family member, UBP9. | 0 |
| RefSeq | XP_018476383.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 10 [Raphanus sativus] | 0 |
| Q9ZSB5 | Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP10 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1J3I6M8 | Ubiquitin carboxyl-terminal hydrolase OS=Noccaea caerulescens OX=107243 GN=LE_TR19012_c0_g1_i1_g.61038 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology