Basic Information
Locus ID:
Sp6g06770.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ankyrin repeat family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-1 | 2946495 | 2948644 | - | Sp6g06770.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 35,786.33 Da | 45.73 | 100.09 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 154 | 194 | 4.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 154 | 200 | 1.23E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 211 | 2.4E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 155 | 193 | 2.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 155 | 194 | 12.474524 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 215 | 237 | 8.560909 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 215 | 237 | 8.57608 | IPR002110 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05350.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013614823.1 | PREDICTED: uncharacterized protein LOC106321049 [Brassica oleracea var. oleracea] | 0 |
| Q9FKX5 | NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8BCT1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_001505 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT4G05350.1, AT4G12140.1, AT4G12150.1, AT4G12190.1 ... |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10029142m.g.v1.0, Thhalv10029147m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06770.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g058300.2N, BniB08g037110.2N, BniB08g051300.2N ... |