Basic Information
Locus ID:
Sp6g06310.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
spa1-related 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-1 | 2731723 | 2737855 | - | Sp6g06310.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 114,654.44 Da | 52.96 | 75.46 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 715 | 1031 | 2.22021E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 895 | 927 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 805 | 843 | 0.0031 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 295 | 555 | 2.03E-16 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 718 | 1033 | 1.68E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 694 | 1035 | 2.8E-124 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 294 | 554 | 9.9E-22 | - |
| SMART | SM00320 | WD40_4 | 889 | 927 | 2.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 846 | 885 | 0.033 | IPR001680 |
| SMART | SM00320 | WD40_4 | 993 | 1033 | 3.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 711 | 750 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 803 | 843 | 2.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 761 | 800 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 938 | 977 | 10.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 896 | 929 | 10.469233 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 785 | 809 | 9.639578 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 810 | 852 | 10.942887 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 192 | 548 | 8.76804 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 896 | 929 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 810 | 845 | 8.518333 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 787 | 801 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 914 | 928 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 830 | 844 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 914 | 928 | 1.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 787 | 801 | 1.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 830 | 844 | 1.8E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 160 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | NP_192849.4 | SPA1-related 2 [Arabidopsis thaliana] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8S2AX37 | Elongation factor Ts, mitochondrial OS=Arabidopsis arenosa OX=38785 GN=EFTS PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology