Basic Information
Locus ID:
Sp6g05720.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-1 | 2414052 | 2414762 | - | Sp6g05720.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.50 | 27,023.24 Da | 42.79 | 92.33 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 187 | 230 | 2.9E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 181 | 234 | 3.31E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 235 | 1.9E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 187 | 229 | 8.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 187 | 230 | 12.25323 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15740.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006396860.1 | uncharacterized protein LOC18014454 [Eutrema salsugineum] | 0 |
| Q6ZSG1 | E3 ubiquitin-protein ligase ARK2C OS=Homo sapiens OX=9606 GN=ARK2C PE=1 SV=1 | 0 | |
| TrEMBL | A0A565B648 | RING-type domain-containing protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS7576 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G14970.1, AT3G15740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10029392m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g05720.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g057340.2N |