Basic Information
Locus ID:
Sp6g04740.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-1 | 1929010 | 1929633 | - | Sp6g04740.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.31 | 23,153.24 Da | 50.44 | 78.16 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 159 | 196 | 2.05659E-8 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 156 | 202 | 3.7E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 147 | 204 | 7.51E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 206 | 2.7E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 159 | 196 | 1.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 159 | 197 | 10.954966 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03965.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020877725.1 | death-associated inhibitor of apoptosis 1 [Arabidopsis lyrata subsp. lyrata] | 0 |
| TrEMBL | A0A6D2KZE9 | RING-type domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS41612 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology