Basic Information
Locus ID:
Sp6g04390.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-1 | 1781153 | 1784261 | - | Sp6g04390.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 56,573.64 Da | 37.74 | 77.41 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01657 | Salt stress response/antifungal | 159 | 245 | 1.7E-9 | IPR002902 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 350 | 434 | 1.1E-15 | IPR001245 |
| Pfam | PF01657 | Salt stress response/antifungal | 35 | 129 | 3.1E-10 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 328 | 437 | 4.57E-28 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 25 | 131 | 1.7E-12 | IPR038408 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 308 | 422 | 5.3E-38 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 150 | 248 | 4.6E-19 | IPR038408 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 138 | 248 | 16.253496 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 23 | 132 | 13.438293 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 347 | 509 | 13.559466 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 353 | 375 | - | IPR017441 |
| Coils | Coil | Coil | 157 | 177 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04540.3 | - | 0 |
| RefSeq | XP_006396687.1 | cysteine-rich receptor-like protein kinase 40 isoform X2 [Eutrema salsugineum] | 0 |
| Q9SYS7 | Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana OX=3702 GN=CRK39 PE=3 SV=1 | 0 | |
| TrEMBL | V4KJV5 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028504mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 3 | AT4G04500.1, AT4G04540.1, AT4G04570.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10028430m.g.v1.0, Thhalv10028504m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp6g04360.v2.2, Sp6g04390.v2.2, SpUn0392_0010.v2.2 |
| Brassicaceae | Brassica nigra | 15 | BniB04g010550.2N, BniB05g056170.2N, BniB08g026560.2N ... |