Basic Information
Locus ID:
Sp6g04370.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-1 | 1773984 | 1776532 | - | Sp6g04370.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 73,449.28 Da | 40.65 | 89.52 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 347 | 608 | 7.86314E-95 | - |
| Pfam | PF01657 | Salt stress response/antifungal | 151 | 241 | 9.9E-8 | IPR002902 |
| Pfam | PF00069 | Protein kinase domain | 343 | 541 | 1.5E-46 | IPR000719 |
| Pfam | PF01657 | Salt stress response/antifungal | 32 | 123 | 1.0E-9 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 326 | 629 | 2.7E-79 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 301 | 416 | 2.9E-35 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 24 | 125 | 4.6E-12 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 145 | 245 | 1.8E-15 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 417 | 613 | 2.9E-56 | - |
| SMART | SM00220 | serkin_6 | 341 | 608 | 1.3E-37 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 21 | 126 | 13.881845 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 341 | 614 | 38.378769 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 139 | 245 | 15.067671 | IPR002902 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 347 | 369 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 462 | 474 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04510.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 38. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_006396683.2 | uncharacterized protein LOC18014392 [Eutrema salsugineum] | 0 |
| Q9XEC8 | Cysteine-rich receptor-like protein kinase 38 OS=Arabidopsis thaliana OX=3702 GN=CRK38 PE=3 SV=1 | 0 | |
| TrEMBL | V4MZQ8 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028498mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G04490.1, AT4G04510.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028498m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g04370.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g038020.2N, BniB08g038050.2N |