Basic Information
Locus ID:
Sp6g04360.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-1 | 1770501 | 1773190 | - | Sp6g04360.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 73,264.55 Da | 50.65 | 80.62 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 350 | 616 | 6.77296E-98 | - |
| Pfam | PF00069 | Protein kinase domain | 347 | 616 | 2.5E-50 | IPR000719 |
| Pfam | PF01657 | Salt stress response/antifungal | 38 | 129 | 1.1E-9 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 160 | 248 | 3.6E-11 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 328 | 636 | 2.7E-81 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 29 | 131 | 8.1E-14 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 147 | 251 | 9.7E-22 | IPR038408 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 307 | 419 | 3.7E-37 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 420 | 626 | 3.1E-58 | - |
| SMART | SM00220 | serkin_6 | 344 | 619 | 4.0E-40 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 344 | 627 | 39.594292 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 144 | 251 | 18.03676 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 19 | 132 | 13.239146 | IPR002902 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 350 | 372 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 465 | 477 | - | IPR008271 |
| Coils | Coil | Coil | 545 | 565 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04500.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 37. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_013740823.2 | cysteine-rich receptor-like protein kinase 37 [Brassica napus] | 0 |
| Q9XEC7 | Cysteine-rich receptor-like protein kinase 37 OS=Arabidopsis thaliana OX=3702 GN=CRK37 PE=3 SV=1 | 0 | |
| TrEMBL | A0A565BVX8 | Protein kinase domain-containing protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS16003 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 3 | AT4G04500.1, AT4G04540.1, AT4G04570.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10028430m.g.v1.0, Thhalv10028504m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp6g04360.v2.2, Sp6g04390.v2.2, SpUn0392_0010.v2.2 |
| Brassicaceae | Brassica nigra | 15 | BniB04g010550.2N, BniB05g056170.2N, BniB08g026560.2N ... |