Basic Information
Locus ID:
Sp6g04220.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Short Name:
CDPK1
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-1 | 1689064 | 1691814 | + | Sp6g04220.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 26,956.94 Da | 48.65 | 75.23 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 166 | 241 | 9.9E-17 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 166 | 241 | 1.08E-16 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 161 | 241 | 3.8E-18 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 241 | 13.347456 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04720.1 | calcium-dependent protein kinase 21. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_013748778.2 | calcium-dependent protein kinase 21-like [Brassica napus] | 0 |
| P28582 | Calcium-dependent protein kinase OS=Daucus carota OX=4039 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0D3BT45 | Protein kinase domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Schrenkiella parvula | 82 | Sp1g24500.v2.2, Sp1g24510.v2.2, Sp1g30380.v2.2 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g20010 |