Basic Information
Locus ID:
Sp6g04010.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Thioredoxin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-1 | 1569884 | 1571795 | + | Sp6g04010.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 53,176.90 Da | 30.63 | 80.72 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03028 | GRX_PICOT_like | 287 | 376 | 1.00798E-54 | IPR033658 |
| CDD | cd03028 | GRX_PICOT_like | 157 | 246 | 1.64579E-59 | IPR033658 |
| CDD | cd02984 | TRX_PICOT | 10 | 102 | 7.38935E-41 | - |
| CDD | cd03028 | GRX_PICOT_like | 394 | 483 | 1.0077E-53 | IPR033658 |
| Pfam | PF00462 | Glutaredoxin | 403 | 467 | 2.4E-15 | IPR002109 |
| Pfam | PF00085 | Thioredoxin | 17 | 102 | 7.9E-15 | IPR013766 |
| Pfam | PF00462 | Glutaredoxin | 296 | 359 | 6.0E-14 | IPR002109 |
| Pfam | PF00462 | Glutaredoxin | 166 | 229 | 1.8E-16 | IPR002109 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 284 | 384 | 1.16E-28 | IPR036249 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 389 | 487 | 3.27E-29 | IPR036249 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 3 | 95 | 9.41E-25 | IPR036249 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 154 | 254 | 5.2E-31 | IPR036249 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 393 | 488 | 2.1E-37 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 156 | 255 | 1.1E-39 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 2 | 111 | 2.5E-26 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 286 | 385 | 1.3E-36 | - |
| TIGRFAM | TIGR00365 | TIGR00365: monothiol glutaredoxin, Grx4 family | 392 | 487 | 1.0E-36 | IPR004480 |
| TIGRFAM | TIGR00365 | TIGR00365: monothiol glutaredoxin, Grx4 family | 286 | 380 | 2.0E-35 | IPR004480 |
| TIGRFAM | TIGR00365 | TIGR00365: monothiol glutaredoxin, Grx4 family | 155 | 249 | 1.6E-37 | IPR004480 |
| ProSiteProfiles | PS51354 | Glutaredoxin domain profile. | 154 | 256 | 24.888121 | - |
| ProSiteProfiles | PS51352 | Thioredoxin domain profile. | 1 | 107 | 9.861044 | IPR013766 |
| ProSiteProfiles | PS51354 | Glutaredoxin domain profile. | 391 | 488 | 23.932936 | - |
| ProSiteProfiles | PS51354 | Glutaredoxin domain profile. | 284 | 386 | 23.983879 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04950.1 | thioredoxin family protein. | 0 |
| RefSeq | XP_006396649.1 | monothiol glutaredoxin-S17 [Eutrema salsugineum] | 0 |
| Q9ZPH2 | Monothiol glutaredoxin-S17 OS=Arabidopsis thaliana OX=3702 GN=GRXS17 PE=1 SV=1 | 0 | |
| TrEMBL | A0A178V3D6 | GRXS17 OS=Arabidopsis thaliana OX=3702 GN=AXX17_At4g05280 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20297 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_332 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018012 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g183330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26163, Sbi_jg9960 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18758 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017023 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45912, Sgl50612 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009571, gene:ENSEOMG00000033137 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0005070, CQ.Regalona.r1.8BG0005240 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30088730 |
| Apiaceae | Apium graveolens | 2 | Ag10G00188, Ag7G00740 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G012440 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712092 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.797.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G10092 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G04950.1, AT4G32580.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028614m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g04010.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g038340.2N, BniB08g047350.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2301 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2609 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g01870 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1111s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g09450 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.968 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005707 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G24766, Lb5G29235, Lb5G29236 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1686, BH01.1885, CH01.1991 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0112660, gene-QOZ80_2BG0164590 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0047590.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011838 |
| Poaceae | Oryza coarctata | 2 | Oco19G007310, Oco20G007220 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g35720.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G186300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0502820, Pt_Chr0502849 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G030100, Chr09G002070, Chr15G021420 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G309300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG025750, gene_TRIDC1BG031290 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G168900.1, TraesCS1B02G188000.1 ... |
| Poaceae | Zea mays | 8 | Zm00001eb044380_P001, Zm00001eb091680_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45335 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12700 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1848, evm.TU.LG20.59 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g04550 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.228 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-23778, nbisL1-mrna-29479 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2411 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20906 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.139 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015797 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-20944, nbisL1-mrna-5959 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16894, nbisL1-mrna-21914 |
| Salicaceae | Populus euphratica | 2 | populus_peu10075, populus_peu18197 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621496 |
| Solanaceae | Solanum chilense | 1 | SOLCI002556000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011553 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.22300_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1283 |
| Zosteraceae | Zostera marina | 1 | Zosma05g24240.v3.1 |