Basic Information
Locus ID:
Sp6g03940.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-1 | 1537175 | 1538856 | - | Sp6g03940.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 23,643.90 Da | 39.35 | 88.33 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03997 | VPS28 protein | 19 | 205 | 1.5E-68 | IPR007143 |
| SUPERFAMILY | SSF140111 | Endosomal sorting complex assembly domain | 3 | 98 | 9.81E-29 | IPR037202 |
| SUPERFAMILY | SSF140427 | VPS28 C-terminal domain-like | 111 | 205 | 3.53E-34 | IPR037206 |
| Gene3D | G3DSA:1.20.1440.200 | - | 4 | 98 | 2.9E-31 | IPR038358 |
| Gene3D | G3DSA:1.20.120.1130 | - | 107 | 206 | 3.8E-40 | IPR037206 |
| PIRSF | PIRSF017535 | ESCRT1_Vps28 | 1 | 206 | 1.7E-78 | IPR007143 |
| ProSiteProfiles | PS51313 | VPS28 N-terminal domain profile. | 1 | 100 | 30.425695 | IPR017898 |
| ProSiteProfiles | PS51310 | VPS28 C-terminal domain profile. | 110 | 206 | 45.049919 | IPR017899 |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05000.1 | Vacuolar protein sorting-associated protein VPS28 family protein. | 0 |
| RefSeq | NP_001328317.1 | Vacuolar protein sorting-associated protein VPS28 family protein [Arabidopsis thaliana] | 0 |
| Q9S9T7 | Vacuolar protein sorting-associated protein 28 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=VPS28-2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T1ZHB3 | Vacuolar protein sorting-associated protein 28 homolog OS=Arabidopsis suecica OX=45249 GN=ISN44_As04g004790 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg21909, jg24808, jg38616 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13923, gene_22301 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017890 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g203370 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg10271, Sbi_jg47978, Sbi_jg59029, Sbi_jg63600 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg22213, Seu_jg23289 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00020761, GOSA_00023950 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl73651, Sgl77114, Sgl80436, Sgl82897 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012177, gene:ENSEOMG00000035272 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0004080, CQ.Regalona.r1.8BG0004240 |
| Apiaceae | Apium graveolens | 2 | Ag7G00619, AgUnG00192 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G010090, COCNU_14G006570 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719338 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G19334, Ftri8G00839 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G05000.1, AT4G21560.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10026248m.g.v1.0, Thhalv10028962m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g03940.v2.2, Sp7g19690.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g022420.2N, BniB05g015570.2N, BniB08g047170.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g05580 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0849s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g26590 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.1024 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039020 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3491, BH02.3466, CH02.3005 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0035810, gene-QOZ80_1BG0085820 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0293660.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_056116, gene-QYE76_056118 |
| Poaceae | Oryza coarctata | 2 | Oco01G021920, Oco02G022490 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g57260.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G297600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0601631 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G007910, Chr05G025600, Chr08G024100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G512600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG046210, gene_TRIDC3BG052540 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G317000.1, TraesCS3B02G349400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb151450_P001, Zm00001eb369840_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11739, nbis-gene-31262 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11285, Zma_g8782 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1675, evm.TU.LG14.912 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g23660, gene.Posoc10g00800 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.910, evm.TU.Scaffold_13_RagTag.184 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-23832, nbisL1-mrna-29549, nbisL1-mrna-29886 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15234, nbisL1-mrna-2916 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20865, nbisL1-mrna-21633 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000015l.42, add.evm.TU.utg000027l.41 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015734, Maker00017468 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19137, nbisL1-mrna-20960 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16933, nbisL1-mrna-23906 |
| Salicaceae | Populus euphratica | 1 | populus_peu10147 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132618512, gene-LOC132621782 |
| Solanaceae | Solanum chilense | 2 | SOLCI004257200, SOLCI007460500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107010942, gene-LOC107012217 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.17289_chr09_-, STRG.22169_chr09_-, gene_15836 |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G1229, TC07G2250 |
| Zosteraceae | Zostera marina | 1 | Zosma04g26580.v3.1 |