Basic Information
Locus ID:
Sp6g03220.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
grr1-like protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-1 | 1248810 | 1250743 | - | Sp6g03220.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 65,833.76 Da | 45.57 | 98.31 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 62 | 108 | 1.4E-23 | IPR041101 |
| Pfam | PF18511 | F-box | 5 | 43 | 5.2E-17 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 21 | 530 | 1.02E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 42 | 571 | 9.1E-176 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 41 | 1.7E-16 | - |
| SMART | SM00367 | LRR_CC_2 | 427 | 450 | 51.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 100 | 124 | 170.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 476 | 500 | 34.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 367 | 391 | 1.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 309 | 332 | 460.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 5 | 46 | 1.9E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 151 | 185 | 450.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 125 | 150 | 570.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 284 | 308 | 520.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03190.1 | GRR1-like protein 1. Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression. | 0 |
| RefSeq | XP_006396547.1 | GRR1-like protein 1 [Eutrema salsugineum] | 0 |
| Q9ZR12 | GRR1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=GRH1 PE=1 SV=1 | 0 | |
| TrEMBL | E4MVG8 | mRNA, clone: RTFL01-02-K12 OS=Eutrema halophilum OX=98038 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology