Basic Information
Locus ID:
Sp6g03010.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
cellular macromolecule catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-1 | 1176589 | 1177605 | + | Sp6g03010.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 33,041.29 Da | 75.34 | 61.67 | -0.93 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 3 | 49 | 2.27372E-7 | - |
| Pfam | PF00240 | Ubiquitin family | 10 | 47 | 1.1E-7 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 49 | 1.4E-9 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 224 | 279 | 5.07E-5 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 65 | 1.8E-10 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 48 | 11.812365 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 78 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05230.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_009111245.1 | uncharacterized protein LOC103836702 [Brassica rapa] | 0 |
| Q9ZQZ6 | Ubiquitin domain-containing protein 7SL RNA2 OS=Arabidopsis thaliana OX=3702 GN=7SL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6D2K4U2 | Ubiquitin-like domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS34312 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g03010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g045640.2N |