Basic Information
Locus ID:
Sp6g03000.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Ubiquitin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-1 | 1173067 | 1175796 | + | Sp6g03000.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 58,783.84 Da | 52.39 | 74.88 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 25 | 87 | 9.2E-11 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 17 | 94 | 8.06E-13 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 292 | 357 | 1.01E-5 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 22 | 93 | 1.2E-13 | - |
| SMART | SM00213 | ubq_7 | 23 | 95 | 0.0028 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 23 | 92 | 11.072001 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 277 | 355 | 8.567829 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 148 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03370.1 | Ubiquitin family protein. | 0 |
| RefSeq | XP_006396522.2 | ubiquitin domain-containing protein 7SL RNA2 [Eutrema salsugineum] | 0 |
| Q9ZT95 | Ubiquitin domain-containing protein 7SL RNA1 OS=Arabidopsis thaliana OX=3702 GN=7SL1 PE=3 SV=2 | 0 | |
| TrEMBL | V4KJF4 | Ubiquitin-like domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10029305mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10029305m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g03000.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB08g039200.2N, BniB08g039210.2N, BniB08g045630.2N |