Basic Information
Locus ID:
Sp6g00400.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Short Name:
RHB1A
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-1 | 133255 | 135693 | + | Sp6g00400.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.40 | 21,061.43 Da | 58.18 | 75.75 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 140 | 182 | 4.5E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 133 | 189 | 2.5E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 120 | 190 | 3.0E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 142 | 182 | 1.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 142 | 183 | 12.046688 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00335.1 | RING-H2 finger B1A. | 0 |
| RefSeq | XP_006396234.1 | probable E3 ubiquitin-protein ligase RHB1A [Eutrema salsugineum] | 0 |
| Q2HIJ8 | Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RHB1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T1Z5Z5 | Zinc finger RING-type OS=Arabidopsis thaliana x Arabidopsis arenosa OX=1240361 GN=ISN45_Aa06g039930 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg23486, jg29374, jg29625, jg7641 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23606 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah004602, Ah022976 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g004370, BVRB_5g100310 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg23893, Sbi_jg4533, Sbi_jg49432, Sbi_jg7721 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12302, Seu_jg5943 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000468, GOSA_00001165 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl11047, Sgl16456, Sgl52058, Sgl52061, Sgl57335 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000006535, gene:ENSEOMG00000014935 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2BG0025110, CQ.Regalona.r1.5AG0007150 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30004710 |
| Apiaceae | Apium graveolens | 2 | Ag6G00027, Ag6G00693 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G008390 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103699032, gene-LOC103705477 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.1843.V1.1, AsparagusV1_05.1629.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G32126, Ftri16G02347, Ftri18G13380, Ftri7G26787 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT4G00335.1, AT4G23450.2, AT5G41350.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10026387m.g.v1.0, Thhalv10027931m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp6g00400.v2.2, Sp7g00590.v2.2, Sp7g21350.v2.2 ... |
| Brassicaceae | Brassica nigra | 5 | BniB01g025010.2N, BniB02g080460.2N, BniB05g013840.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0330 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0405, Cgl03G0424 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno10g09860, gene.Cymno14g05620 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.2652s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate07g11080, gene.Thate08g16040 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-11247, nbisL1-mrna-12609, nbisL1-mrna-2810 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.845, evm.TU.LG10.1431 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005238 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G02335, Lb1G03541, Lb2G09294, Lb2G11093 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3982, BH01.2907, CH07.3855 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0119650, gene-QOZ80_2AG0150890 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0630600.1 |
| Poaceae | Oryza coarctata | 3 | Oco19G000700, Oco21G004650, Oco22G005270 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g05230.2, LOC_Os11g18947.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G260500, gene-BS78_04G323700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0604461, Pt_Chr0604520, Pt_Chr0605599 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr15G000490, Chr18G005140 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G727100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG058740, gene_TRIDC6BG069500 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G399600.1, TraesCS6B02G439800.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb026420_P004, Zm00001eb089610_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43023 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g13060, Zma_g13061, Zma_g14736, Zma_g15838 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.2251, evm.TU.LG04.3356, evm.TU.LG06.54 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g10060 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_14_RagTag.167, evm.TU.Scaffold_16_RagTag.160 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-10825, nbisL1-mrna-18225, nbisL1-mrna-22399 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-10297, nbisL1-mrna-11104, nbisL1-mrna-2845 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-10545, nbisL1-mrna-20336, nbisL1-mrna-8543 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000006l.160, evm.TU.utg000007l.274 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00013341, Maker00014402, Maker00018484 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-16028, nbisL1-mrna-3535, nbisL1-mrna-9183 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-10915, nbisL1-mrna-6699, nbisL1-mrna-7050 |
| Salicaceae | Populus euphratica | 3 | populus_peu03585, populus_peu27671, populus_peu31645 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132634881, gene-LOC132645557 |
| Solanaceae | Solanum chilense | 2 | SOLCI001074400, SOLCI002361300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107012546, gene-LOC107026945 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.29032_chr11_+, gene_15861 |
| Tamaricaceae | Tamarix chinensis | 3 | TC03G2226, TC06G0209, TC09G2242 |
| Zosteraceae | Zostera marina | 1 | Zosma01g21880.v3.1 |