Basic Information
Locus ID:
Sp6g00210.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
EF-hand domain pair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-1 | 56068 | 57658 | - | Sp6g00210.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 29,604.64 Da | 61.98 | 66.25 | -0.92 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 202 | 256 | 1.99578E-9 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 199 | 255 | 3.0E-11 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 182 | 256 | 5.67E-16 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 157 | 263 | 1.2E-14 | - |
| SMART | SM00054 | efh_1 | 230 | 258 | 3.0E-6 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 226 | 261 | 13.174425 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 239 | 251 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 123 | - | - |
| Coils | Coil | Coil | 36 | 56 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73440.1 | calmodulin-related. | 0 |
| RefSeq | XP_006396212.1 | caltractin isoform X1 [Eutrema salsugineum] | 0 |
| TrEMBL | V4KIK1 | EF-hand domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028898mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29695 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1325 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023214 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29250, Sbi_jg3490 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6475 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000240, GOSA_00000241 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl11328, Sgl11329, Sgl16719, Sgl79922, Sgl82364 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014719, gene:ENSEOMG00000034427 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0006610 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30002530 |
| Apiaceae | Apium graveolens | 1 | Ag10G00277 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G004000 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711628 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.23.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G11820 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G73440.1, AT4G00140.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028898m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g00210.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g042330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1142 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1153 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g04130 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g03190 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.144 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032618 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34058 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1709, BH09.1895, CH09.2037 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0309250, gene-QOZ80_4BG0340260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0184310.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_007606, gene-QYE76_045197 |
| Poaceae | Oryza coarctata | 2 | Oco07G011620, Oco08G011270 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g45180.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G171200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301886, Pt_Chr0301906 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G007900, Chr26G011810 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G638700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG053290, gene_TRIDC2BG056180 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G368600.1, TraesCS2B02G385800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb427420_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-37191 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20130 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.750, evm.TU.LG24.741 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g04080 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.200, evm.TU.Scaffold_8_RagTag.1532 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-8315, nbisL1-mrna-8392 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20249 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15153 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.105 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003613 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9448 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22748 |
| Salicaceae | Populus euphratica | 1 | populus_peu31816 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645741 |
| Solanaceae | Solanum chilense | 1 | SOLCI003456900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008422 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25304_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2629 |
| Zosteraceae | Zostera marina | 1 | Zosma02g16700.v3.1 |