Basic Information
Locus ID:
Sp5g34960.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
CCR4-associated factor 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-7 | 2501064 | 2501888 | - | Sp5g34960.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 31,225.19 Da | 34.18 | 94.20 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 158 | 222 | 2.4E-6 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 15 | 137 | 1.0E-12 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 12 | 265 | 1.03E-90 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 2 | 269 | 1.4E-101 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80780.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_006389834.1 | probable CCR4-associated factor 1 homolog 6 [Eutrema salsugineum] | 0 |
| Q9SAI2 | Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J3IUX8 | poly(A)-specific ribonuclease OS=Noccaea caerulescens OX=107243 GN=GA_TR22007_c0_g1_i1_g.72277 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology