Basic Information
Locus ID:
Sp5g34720.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-7 | 2416646 | 2419415 | - | Sp5g34720.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.51 | 39,597.66 Da | 52.20 | 78.62 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.64324E-27 | - |
| Pfam | PF00627 | UBA/TS-N domain | 325 | 360 | 6.5E-12 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 242 | 297 | 2.7E-23 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 150 | 184 | 2.0E-13 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 7.6E-15 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 304 | 366 | 4.0E-15 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 238 | 306 | 1.31E-23 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 83 | 8.52E-19 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 124 | 190 | 4.0E-12 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 6.9E-25 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 139 | 189 | 1.0E-20 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 231 | 297 | 9.3E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 316 | 364 | 3.2E-24 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 3.7E-18 | IPR000626 |
| SMART | SM00165 | uba_6 | 325 | 362 | 2.2E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 146 | 186 | 0.0083 | IPR015940 |
| SMART | SM00727 | CBM | 240 | 283 | 9.9E-8 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 368 | 1.9E-120 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 323 | 363 | 15.390351 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 17.757048 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 144 | 187 | 12.185437 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 351 | 366 | 1.1E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 319 | 335 | 1.1E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 268 | 290 | 1.1E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 336 | 350 | 1.1E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 118 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_002889262.1 | ubiquitin receptor RAD23b [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | D7KWK8 | Ubiquitin receptor RAD23 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_316857 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology