halophFGD

Basic Information

Locus ID: Sp5g34100.v2.2

Species & Taxonomic ID: Schrenkiella parvula & 98039

Genome Assembly: v2.2

Description: DNA repair protein recA

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ch5-7	2177609	2180528	-	Sp5g34100.v2.2

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.63	47,497.61 Da	49.27	86.79	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00983	recA	81	401	0.0	IPR013765
Pfam	PF00154	recA bacterial DNA recombination protein	85	346	7.1E-118	IPR013765
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	83	345	5.08E-54	IPR027417
SUPERFAMILY	SSF54752	RecA protein, C-terminal domain	346	401	1.7E-17	IPR023400
Gene3D	G3DSA:3.40.50.300	-	111	403	1.9E-104	IPR027417
SMART	SM00382	AAA_5	133	304	1.1E-9	IPR003593
TIGRFAM	TIGR02012	tigrfam_recA: protein RecA	81	401	1.5E-143	IPR013765
ProSiteProfiles	PS50163	RecA family profile 2.	275	350	28.719727	IPR020587
ProSiteProfiles	PS50162	RecA family profile 1.	112	270	28.434977	IPR020588
ProSitePatterns	PS00321	recA signature.	289	297	-	IPR020584
PRINTS	PR00142	RecA protein signature	241	270	2.7E-76	IPR013765
PRINTS	PR00142	RecA protein signature	203	232	2.7E-76	IPR013765
PRINTS	PR00142	RecA protein signature	286	314	2.7E-76	IPR013765
PRINTS	PR00142	RecA protein signature	375	392	2.7E-76	IPR013765
PRINTS	PR00142	RecA protein signature	321	350	2.7E-76	IPR013765
PRINTS	PR00142	RecA protein signature	169	198	2.7E-76	IPR013765
Hamap	MF_00268	Protein RecA [recA].	82	407	44.988235	IPR013765
MobiDBLite	mobidb-lite	consensus disorder prediction	415	436	-	-

Gene Ontology

Biological Process:

GO:0006259 (DNA metabolic process) GO:0006281 (DNA repair)

Molecular Function:

GO:0003677 (DNA binding) GO:0003697 (single-stranded DNA binding) GO:0005524 (ATP binding) GO:0008094 (ATP-dependent activity, acting on DNA)

KEGG Pathway

KO Term:

K03553 (recombination protein RecA)

Pathway:

ko03440 (Homologous recombination) map03440 (Homologous recombination)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G79050.1	recA DNA recombination family protein.
RefSeq	XP_018456250.1	PREDICTED: DNA repair protein recA homolog 1, chloroplastic [Raphanus sativus]
Swiss-Prot	Q39199	DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1
TrEMBL	A0A6J0L7P4	DNA repair protein recA homolog 1, chloroplastic OS=Raphanus sativus OX=3726 GN=LOC108827365 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg15413, jg20582, jg32367, jg32916, jg4300
Aizoaceae	Mesembryanthemum crystallinum	3	gene_11024, gene_4617, gene_7669
Amaranthaceae	Atriplex hortensis	3	Ah007405, Ah015172, Ah022007
Amaranthaceae	Beta vulgaris	1	BVRB_3g062120
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg18396, Sbi_jg18962, Sbi_jg36798, Sbi_jg37416 ... Sbi_jg59417, Sbi_jg63229
Amaranthaceae	Salicornia europaea	3	Seu_jg23662, Seu_jg4718, Seu_jg5257
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00014743, GOSA_00020746, GOSA_00024178
Amaranthaceae	Suaeda glauca	7	Sgl02796, Sgl07923, Sgl22464, Sgl27680, Sgl41785, Sgl41786 ... Sgl46587
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000009222, gene:ENSEOMG00000012094 ... gene:ENSEOMG00000026919, gene:ENSEOMG00000030614, gene:ENSEOMG00000031839, gene:ENSEOMG00000043365, gene:ENSEOMG00000044628, gene:ENSEOMG00000046222
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3AG0021890, CQ.Regalona.r1.4AG0015950 ... CQ.Regalona.r1.4BG0014080, CQ.Regalona.r1.8AG0014760, CQ.Regalona.r1.8BG0015980
Anacardiaceae	Pistacia vera	3	pistato.v30164210, pistato.v30185770, pistato.v30259480
Apiaceae	Apium graveolens	4	Ag10G01443, Ag10G02923, Ag2G01505, Ag5G01569
Arecaceae	Cocos nucifera	3	COCNU_04G008610, COCNU_09G001050, COCNU_14G009260
Arecaceae	Phoenix dactylifera	3	gene-LOC103696257, gene-LOC103714685, gene-LOC103723937
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.1944.V1.1, AsparagusV1_05.87.V1.1 ... AsparagusV1_07.3483.V1.1
Asteraceae	Flaveria trinervia	4	Ftri10G25414, Ftri15G00504, Ftri15G06633, Ftri3G03501
Brassicaceae	Arabidopsis thaliana	4	AT1G79050.1, AT2G19490.1, AT3G10140.1, AT3G32920.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10018594m.g.v1.0, Thhalv10020901m.g.v1.0 ... Thhalv10022701m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g08420.v2.2, Sp3g32870.v2.2, Sp5g34100.v2.2
Brassicaceae	Brassica nigra	5	BniB02g015630.2N, BniB03g023610.2N, BniB03g068780.2N ... BniB05g074790.2N, BniB06g050620.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G1598, Ceq04G1001, Ceq06G0847
Casuarinaceae	Casuarina glauca	3	Cgl01G1764, Cgl04G1132, Cgl06G0872
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno04g04220, gene.Cymno11g11360, gene.Cymno14g10860
Dunaliellaceae	Dunaliella salina	1	Dusal.0151s00014.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g01200, gene.Thate05g03390, gene.Thate09g10070
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-9314
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.2520, evm.TU.LG05.1046, evm.TU.LG07.1249
Plantaginaceae	Plantago ovata	3	Pov_00006763, Pov_00038048, Pov_00039633
Plumbaginaceae	Limonium bicolor	4	Lb2G11606, Lb3G16114, Lb4G23234, Lb4G24730
Poaceae	Echinochloa crus-galli	11	AH01.1240, AH02.4208, AH02.4481, BH01.1486, BH02.4233 ... BH02.4533, BH04.1089, CH02.4259, CH02.4584, CH04.1271, CH06.2641
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0043280, gene-QOZ80_1BG0093200 ... gene-QOZ80_3AG0224540, gene-QOZ80_3BG0269660
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0305240.1, HORVU.MOREX.r3.3HG0319320.1 ... HORVU.MOREX.r3.5HG0508640.1
Poaceae	Lolium multiflorum	3	gene-QYE76_057130, gene-QYE76_057959, gene-QYE76_063512
Poaceae	Oryza coarctata	6	Oco01G027500, Oco02G028580, Oco02G030920, Oco05G018750 ... Oco06G019540, Oco22G005490
Poaceae	Oryza sativa	4	LOC_Os01g67510.1, LOC_Os01g71690.2, LOC_Os03g43850.1 ... LOC_Os11g19720.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G145900, gene-BS78_03G370100, gene-BS78_K141300
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0104476, Pt_Chr0207353, Pt_Chr0600272, Pt_Chr0600304
Poaceae	Sporobolus alterniflorus	10	Chr01G009510, Chr02G001220, Chr03G022070, Chr05G031050 ... Chr05G033430, Chr07G023590, Chr08G020000, Chr0G024230, Chr0G031560, Chr12G027490
Poaceae	Thinopyrum elongatum	4	Tel3E01G625800, Tel3E01G777600, Tel5E01G598600 ... Tel6E01G748200
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG056180, gene_TRIDC3AG068210 ... gene_TRIDC3BG062860, gene_TRIDC3BG077200, gene_TRIDC5AG055060, gene_TRIDC5BG059060
Poaceae	Triticum aestivum	9	TraesCS3A02G394500.1, TraesCS3A02G484100.1 ... TraesCS3B02G426500.1, TraesCS3B02G530900.1, TraesCS3D02G388300.1, TraesCS3D02G479500.1, TraesCS5A02G376100.1, TraesCS5B02G379700.1, TraesCS5D02G386100.1
Poaceae	Zea mays	4	Zm00001eb050740_P001, Zm00001eb141480_P006 ... Zm00001eb144420_P002, Zm00001eb365600_P001
Poaceae	Zoysia japonica	3	nbis-gene-11092, nbis-gene-20435, nbis-gene-28182
Poaceae	Zoysia macrostachya	4	Zma_g11925, Zma_g18707, Zma_g3207, Zma_g9202
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.2194, evm.TU.LG07.434, evm.TU.LG08.1605 ... evm.TU.LG14.1348, evm.TU.LG15.509, evm.TU.LG22.503
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g07770, gene.Posoc07g10120, gene.Posoc08g07150
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.525, evm.TU.Scaffold_2_RagTag.1193 ... evm.TU.Scaffold_5_RagTag.103
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-10504, nbisL1-mrna-12996, nbisL1-mrna-3844
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-12771, nbisL1-mrna-17267, nbisL1-mrna-5363
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-10671, nbisL1-mrna-16913, nbisL1-mrna-18798
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000006l.61, evm.TU.utg000009l.511 ... evm.TU.utg000033l.364
Rhizophoraceae	Kandelia obovata	3	Maker00005186, Maker00013790, Maker00014801
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-12413, nbisL1-mrna-4018, nbisL1-mrna-9280
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-5529, nbisL1-mrna-6917, nbisL1-mrna-8182
Salicaceae	Populus euphratica	5	populus_peu00265, populus_peu05057, populus_peu05064 ... populus_peu11925, populus_peu26079
Solanaceae	Lycium barbarum	4	gene-LOC132607484, gene-LOC132617321, gene-LOC132624595 ... gene-LOC132640056
Solanaceae	Solanum chilense	3	SOLCI000424700, SOLCI004293900, SOLCI006871600
Solanaceae	Solanum pennellii	3	gene-LOC107002771, gene-LOC107018851, gene-LOC107025835
Tamaricaceae	Reaumuria soongarica	3	STRG.18129_chr09_-, gene_5108, gene_6052
Tamaricaceae	Tamarix chinensis	3	TC02G3676, TC06G2513, TC12G1159
Zosteraceae	Zostera marina	4	Zosma03g15350.v3.1, Zosma03g34760.v3.1, Zosma06g02240.v3.1 ... Zosma256g00080.v3.1