Basic Information
Locus ID:
Sp5g33540.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ubiquitinyl hydrolase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-7 | 1978928 | 1980107 | + | Sp5g33540.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 23,066.91 Da | 42.43 | 72.19 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 69 | 106 | 5.7E-10 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 65 | 109 | 3.27E-11 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 56 | 113 | 1.2E-12 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 69 | 106 | 11.861931 | IPR002893 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17110.1 | ubiquitin-specific protease 15. Encodes a ubiquitin-specific protease, and its activity has been confirmed in an in vitro assay. ubp15 mutants have defects in cell proliferation, and the associated processes of leaf, root, stem, flower, and silique development. UBP15 can be found in the nucleus and cytoplasm in transient assays. Though UBP15 is expressed in many tissues, UBP15 transcript levels are higher in rosette leaves and inflorescences than in other parts of the plant. | 0 |
| RefSeq | XP_006306123.1 | ubiquitin carboxyl-terminal hydrolase 15 [Capsella rubella] | 0 |
| Q9FPS9 | Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana OX=3702 GN=UBP15 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T2BY42 | Zinc finger MYND-type OS=Arabidopsis suecica OX=45249 GN=ISN44_As07g027320 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology