Basic Information
Locus ID:
Sp5g31230.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
High Mobility Group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-7 | 993964 | 996120 | - | Sp5g31230.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.50 | 38,638.38 Da | 51.13 | 68.14 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 40 | 125 | 9.02839E-48 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 256 | 319 | 2.48369E-19 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 256 | 323 | 5.0E-12 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 43 | 125 | 4.1E-18 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 33 | 135 | 2.09E-31 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 253 | 326 | 1.03E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 17 | 135 | 3.4E-26 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 241 | 336 | 5.2E-19 | IPR036910 |
| SMART | SM00398 | hmgende2 | 255 | 324 | 1.2E-12 | IPR009071 |
| SMART | SM01014 | ARID_2 | 35 | 125 | 1.4E-32 | - |
| SMART | SM00501 | bright_3 | 39 | 130 | 1.2E-36 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 38 | 129 | 25.569647 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 256 | 323 | 13.909996 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| Coils | Coil | Coil | 312 | 332 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_006390237.1 | high mobility group B protein 9 [Eutrema salsugineum] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | V4KJV3 | High mobility group B protein 9 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018826mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology