Basic Information
Locus ID:
Sp5g29880.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-7 | 474607 | 480539 | - | Sp5g29880.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 145,307.84 Da | 47.17 | 82.88 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 610 | 755 | 2.79931E-24 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1159 | 1202 | 7.74643E-22 | - |
| CDD | cd12108 | Hr-like | 35 | 166 | 3.9337E-22 | - |
| Pfam | PF05495 | CHY zinc finger | 1032 | 1106 | 7.6E-19 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 38 | 168 | 4.2E-8 | IPR012312 |
| Pfam | PF13639 | Ring finger domain | 1158 | 1201 | 1.5E-7 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 1207 | 1263 | 1.9E-24 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1159 | 1210 | 3.53E-8 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1097 | 1152 | 7.19E-16 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 1023 | 1089 | 1.44E-17 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 1230 | 1266 | 2.0E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1153 | 1204 | 7.2E-10 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 30 | 186 | 4.2E-21 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 603 | 786 | 3.7E-12 | - |
| SMART | SM00184 | ring_2 | 1074 | 1104 | 13.0 | IPR001841 |
| SMART | SM00184 | ring_2 | 1160 | 1201 | 8.3E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1025 | 1094 | 24.063927 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1096 | 1159 | 29.164394 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1160 | 1202 | 11.692616 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 898 | 925 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74770.1 | zinc ion binding. | 0 |
| RefSeq | XP_006390392.1 | zinc finger protein BRUTUS-like At1g74770 [Eutrema salsugineum] | 0 |
| F4HVS0 | Zinc finger protein BRUTUS-like At1g74770 OS=Arabidopsis thaliana OX=3702 GN=At1g74770 PE=2 SV=1 | 0 | |
| TrEMBL | V4KK93 | Zinc finger protein BRUTUS-like At1g18910 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018022mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology