Basic Information
Locus ID:
Sp5g29530.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-7 | 345980 | 347505 | - | Sp5g29530.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.34 | 33,682.11 Da | 39.43 | 97.08 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 83 | 112 | 3.1E-7 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 78 | 142 | 3.81E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 73 | 175 | 3.1E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 83 | 139 | 9.774726 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 102 | 111 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 201 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74370.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_023643322.1 | uncharacterized protein LOC17895235 isoform X1 [Capsella rubella] | 0 |
| TrEMBL | A0A8S1ZYW3 | Genome assembly, chromosome: 2 OS=Arabidopsis arenosa OX=38785 GN=AARE701A_LOCUS5414 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology