Basic Information
Locus ID:
Sp5g27790.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-6 | 2692702 | 2695284 | - | Sp5g27790.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 46,850.12 Da | 43.21 | 89.88 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 254 | 383 | 4.43482E-60 | - |
| CDD | cd17939 | DEADc_EIF4A | 45 | 243 | 3.10383E-134 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 267 | 375 | 3.8E-29 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 66 | 227 | 1.3E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 110 | 395 | 4.03E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 31 | 249 | 2.1E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 250 | 414 | 1.2E-57 | IPR027417 |
| SMART | SM00487 | ultradead3 | 60 | 257 | 1.8E-56 | IPR014001 |
| SMART | SM00490 | helicmild6 | 294 | 375 | 1.7E-31 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 253 | 414 | 25.596512 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 41 | 69 | 9.817396 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 72 | 242 | 29.012901 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 188 | 196 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72730.1 | DEA(D/H)-box RNA helicase family protein. | 0 |
| RefSeq | XP_013614964.1 | PREDICTED: eukaryotic initiation factor 4A-3 isoform X1 [Brassica oleracea var. oleracea] | 0 |
| Q9CAI7 | Eukaryotic initiation factor 4A-3 OS=Arabidopsis thaliana OX=3702 GN=TIF4A-3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3P6DFE2 | Eukaryotic initiation factor 4A-11 OS=Brassica oleracea OX=3712 GN=BOLC2T09071H PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology