Basic Information
Locus ID:
Sp5g27380.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-6 | 2542667 | 2543635 | + | Sp5g27380.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 35,720.47 Da | 74.32 | 78.70 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 126 | 169 | 7.93433E-21 | - |
| Pfam | PF13639 | Ring finger domain | 126 | 169 | 1.3E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 104 | 173 | 1.39E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 96 | 173 | 1.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 127 | 168 | 4.1E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 127 | 169 | 12.69582 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 322 | - | - |
| Coils | Coil | Coil | 53 | 76 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72310.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). | 0 |
| RefSeq | XP_010415974.1 | PREDICTED: RING-H2 finger protein ATL3 [Camelina sativa] | 0 |
| Q9XF63 | RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7W150 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_014977 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology