Basic Information
Locus ID:
Sp5g27310.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-6 | 2503714 | 2504964 | - | Sp5g27310.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.64 | 45,533.36 Da | 58.22 | 65.14 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 172 | 215 | 3.87842E-19 | - |
| Pfam | PF13639 | Ring finger domain | 172 | 215 | 3.0E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 167 | 221 | 7.83E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 148 | 221 | 1.0E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 173 | 214 | 4.6E-8 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 169 | 223 | 0.0043 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 173 | 215 | 13.108904 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 416 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 378 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 416 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72220.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006390685.1 | RING-H2 finger protein ATL54 [Eutrema salsugineum] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | V4M9X2 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018579mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology