Basic Information
Locus ID:
Sp5g27050.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-6 | 2392981 | 2394854 | + | Sp5g27050.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.92 | 55,374.28 Da | 80.07 | 75.38 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 11 | 161 | 9.68308E-55 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 230 | 273 | 5.4546E-25 | - |
| Pfam | PF13639 | Ring finger domain | 230 | 273 | 4.8E-12 | IPR001841 |
| Pfam | PF02225 | PA domain | 58 | 140 | 1.5E-8 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 76 | 153 | 2.09E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 209 | 285 | 6.48E-20 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 22 | 153 | 5.0E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 191 | 278 | 5.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 231 | 272 | 9.0E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 231 | 273 | 12.666314 | IPR001841 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 16 | 5.0 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 376 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_006390720.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Eutrema salsugineum] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | V4MA39 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018545mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology