Basic Information
Locus ID:
Sp5g25010.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-6 | 1520297 | 1521564 | - | Sp5g25010.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 44,218.34 Da | 54.19 | 63.82 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04601 | Domain of unknown function (DUF569) | 1 | 144 | 8.7E-72 | IPR007679 |
| Pfam | PF04601 | Domain of unknown function (DUF569) | 236 | 380 | 3.1E-57 | IPR007679 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 5 | 152 | 1.7E-25 | IPR008999 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 241 | 384 | 1.83E-20 | IPR008999 |
| Gene3D | G3DSA:2.80.10.50 | - | 238 | 382 | 3.7E-13 | - |
| Gene3D | G3DSA:2.80.10.50 | - | 5 | 141 | 7.6E-15 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 219 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69900.1 | Actin cross-linking protein. | 0 |
| RefSeq | XP_048603921.1 | uncharacterized protein LOC125581854 [Brassica napus] | 0 |
| TrEMBL | A0A1J3K959 | DUF569 domain-containing protein OS=Noccaea caerulescens OX=107243 GN=MP_TR21719_c0_g1_i1_g.61285 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology