Basic Information
Locus ID:
Sp5g24600.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
methyltransferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-6 | 1303192 | 1306051 | + | Sp5g24600.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 69,970.37 Da | 46.30 | 80.29 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 492 | 608 | 8.5E-12 | IPR001525 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 397 | 477 | 5.7E-6 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 491 | 609 | 2.71E-17 | IPR029063 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 300 | 487 | 6.23E-21 | IPR029063 |
| SUPERFAMILY | SSF46934 | UBA-like | 109 | 158 | 4.3E-8 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 168 | 227 | 4.4E-7 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 97 | 150 | 8.9E-10 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 296 | 385 | 2.1E-5 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 481 | 617 | 5.9E-29 | - |
| SMART | SM00165 | uba_6 | 108 | 146 | 7.8E-4 | IPR015940 |
| SMART | SM00165 | uba_6 | 185 | 224 | 1.3 | IPR015940 |
| SMART | SM00165 | uba_6 | 57 | 97 | 50.0 | IPR015940 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 491 | 617 | 21.558907 | IPR001525 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 182 | 225 | 9.848019 | IPR015940 |
| ProSiteProfiles | PS51680 | SAM-dependent methyltransferase DRM-type domain profile. | 288 | 615 | 132.485901 | IPR030380 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 106 | 147 | 11.269748 | IPR015940 |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15380.1 | domains rearranged methylase 1. Encodes methyltransferase involved in the de novo DNA methylation and maintenance of asymmetric methylation of DNA sequences. | 0 |
| RefSeq | XP_033130225.1 | DNA (cytosine-5)-methyltransferase DRM1 isoform X2 [Brassica rapa] | 0 |
| Q9LXE5 | DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana OX=3702 GN=DRM1 PE=3 SV=2 | 0 | |
| TrEMBL | A0A8D9M9T7 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAPAZ1V2_A07P38210.2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology