Basic Information
Locus ID:
Sp5g24460.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-6 | 1254453 | 1255300 | + | Sp5g24460.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 17,379.46 Da | 34.70 | 76.60 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 85 | 154 | 7.92831E-33 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 84 | 153 | 1.9E-29 | IPR020189 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 14 | 92 | 1.76E-27 | IPR008991 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 85 | 155 | 6.85E-25 | IPR012340 |
| Gene3D | G3DSA:2.30.30.30 | - | 1 | 84 | 1.6E-43 | IPR014722 |
| Gene3D | G3DSA:2.40.50.140 | - | 85 | 158 | 1.3E-33 | - |
| SMART | SM01376 | eIF_5a_2 | 84 | 153 | 1.1E-33 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 16 | 151 | 5.9E-42 | IPR001884 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 1 | 156 | 2.6E-67 | IPR001884 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 49 | 56 | - | IPR019769 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69410.1 | eukaryotic elongation factor 5A-3. Encodes eIF5A-2, a putative eukaryotic translation initiation factor. There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950, eIF5A-2/At1g26630 and eIF5A-3/At1g69410. | 0 |
| RefSeq | XP_006391021.1 | eukaryotic translation initiation factor 5A-3 [Eutrema salsugineum] | 0 |
| Q9C505 | Eukaryotic translation initiation factor 5A-3 OS=Arabidopsis thaliana OX=3702 GN=ELF5A-3 PE=2 SV=1 | 0 | |
| TrEMBL | V4KEQ8 | Eukaryotic translation initiation factor 5A OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019263mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology